It would be nice and an app I'd be glad to pay for but I don't think so at present. I think it would have to compensate for the barrel roll effect. Also Oculus 3D captures does something to the aspect ratio that diminishes the 3D effect and not a fair representation of what it looks like in VR.
Here are some 3D game captures I made from the past.
Edit for more oldies but goodies, Roller coaster tycoon and a Far cry 1&2 in 3D. No offence but there is no depth or Z space activity in your capture in 3D, in my opinion a result of the software not being able to capture proper 3D without some kind of encoding. Compare also these on your TV in 3D if you're able to see what I mean.